January 12 coronavirus news

Health officials had warned the Covid-19 pandemic would make winter one of the most difficult times in US history. That prediction is quickly proving true.

December was devastating. And January could be deadlier. 

For the past week, the US averaged more than 3,000 Covid-19 deaths per day. And Monday marked the seventh day in a row the country reported more than 200,000 new Covid-19 infections.

The grim numbers have been fueled by last month's holiday travels and gatherings that experts had warned against. 

"This is what we were afraid of -- people letting their guard down over Christmas and New Years," New Jersey Gov. Phil Murphy said Monday while announcing the spread of the virus was increasing across the state.

Arizona: Hospitalization numbers are at all-time highs due to a surge that the state's top health official said earlier this month followed the Christmas holiday.

California: In Los Angeles, which has been battered by the virus for weeks now, one health official says the aftermath of holiday get-togethers is likely still on its way, and ICUs are already full.

Read more about the crisis in the US:

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The US has averaged more than 3,000 Covid-19 deaths a day over the past week

The head of the Tokyo 2020 Organizing Committee said officials will move forward with preparations for the delayed Olympic Games amid the Covid-19 state of emergency in the Japanese capital and other prefectures.

The Games are scheduled to start on July 23 following a postponement last year due to the pandemic.

Yoshiro Mori, head of the committee, delivered a video address Tuesday to 3,500 Olympic Games staff members, assuring the committee would go ahead with their plans.

A state of emergency was announced for Tokyo and the neighboring Saitama, Chiba and Kanagawa prefectures on January 8 for 31 days. Other local governments have called on Japanese Prime Minister Yoshihide Suga to expand the state of emergency to Osaka, Kyoto and Hyogo prefectures.

New cases: Japan reported 4,864 new Covid-19 infections on Monday, bringing the nationwide total to 292,924, according to the country's Health Ministry. Tokyo, which accounts for more than a quarter of Japan's total cases, added 970 new infections on Tuesday.

The European Medicines Agency has received an application for conditional marketing authorization for the Covid-19 vaccine developed by AstraZeneca and Oxford University, it said in a statement Tuesday.

The EMA said it will proceed with the assessment "under an accelerated timeline" and an opinion on whether to issue an authorization could be made by January 29.

Conditional marketing authorization (CMA) is the process used to fast-track the authorization procedure and speed up approval of treatments and vaccines during public health emergencies.

A decision could be made, "provided that the data submitted on the quality, safety and efficacy of the vaccine are sufficiently robust and complete and that any additional information required to complete the assessment is promptly submitted," the EMA said.

Russia has extended a ban on flights to and from the UK until February 1, the country's coronavirus task force said, according to state-run news agency TASS. 

Russia suspended UK flights on December 22 after the country announced a new, more contagious coronavirus variant that was linked to a surge in cases in England had been identified. 

Ireland recorded the highest Covid-19 infection rate in the world last week, according to statistics from Our World in Data, an online scientific publication based at the University of Oxford.

In the seven days leading up to January 10, Ireland reported 1,322.92 Covid-19 cases per 1 million people, the statistics showed, placing it above any other country over the same period.

Ireland has been facing a worsening Covid-19 outbreak: Last Friday, it reported the highest daily increase in coronavirus infections since the beginning of the pandemic, with 8,248 new cases, according to a statement from the country's Health Department. 

The country has further tightened its lockdown measures since last week -- including closing non-essential construction sites, schools, and childcare services.

Ireland has reported a total of 152,539 Covid-19 cases and 2,352 deaths, according to a Johns Hopkins University tally.

The United States reported 204,652 new Covid-19 cases and 1,731 virus-related deaths on Monday, according to Johns Hopkins University.

The latest figures bring the nationwide total to at least 22,613,782 coronavirus cases, including 376,060 fatalities.

For the past seven consecutive days, the country has recorded more than 200,000 new Covid-19 cases every single day, according to JHU. And over the past week, the US recorded a total of more than 1.7 million Covid-19 cases and over 20,000 deaths.

The totals include cases from all 50 states, the District of Columbia and other US territories, as well as repatriated cases.  

Vaccines: At least 25,480,725 vaccine doses have been distributed, with at least 8,987,322 shots administered, according to the US Centers for Disease Control and Prevention.

Track the US cases: 

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Tracking Covid-19 cases in the US

US Rep. Pramila Jayapal tested positive for Covid-19 Monday night, according to a news release from her office.

It comes after the Democrat Congresswoman from Washington was among those locked down at the US Capitol when it was stormed on Wednesday.

Jayapal began quarantining immediately after the riot, according to the release.

While in isolation, Jayapal continues to work because “the deep urgency of our many crises is paramount,” she said in the release.

Jayapal is also calling for “serious fines to be immediately levied” for House Members who refuse to wear a mask while in the Capitol. She went on to say that “any Member who refuses to wear a mask should be immediately removed from the floor by the Sergeant at Arms.”

El Salvador has imposed a fine on Spirit Airlines for boarding a passenger with a positive Covid-19 PCR test result, the country’s director-general for the Office of Migration and Foreign Affairs, Ricardo Cucalon, said on Monday.  

The flight was from Houston to San Salvador on Thursday.

Spirit has been fined approximately $6,000, Cucalon said, speaking to local media on Monday.   

Some 58 passengers who traveled on the same flight have been notified as well as the country’s Health Ministry -- as it is up to them to determine the best way to contain the potential spread of the virus.

What happened: On Thursday, a Honduran citizen was allowed to board a flight from Houston, Texas to San Salvador, El Salvador’s capital, where migration officials discovered the passenger was allowed to travel with a positive PCR test result for Covid-19.  

Spirit Airlines told CNN on Saturday that it is investigating how the passenger was able to board the plane "despite going through the checks" and that it will take the appropriate measures. The airline affirmed that they have protocols in place to meet the requirements demanded by each country to which they travel.  

El Salvador requires all passengers traveling to the country to provide a negative PCR test conducted within 72 hours before traveling.  

The country resumed international flights in September after closing them for six months due to the coronavirus pandemic. 

The types of microbes people have living in their intestines could affect how sick they get from a coronavirus infection, researchers reported Monday.

And having a less healthy balance of gut microbes could affect whether someone has a pattern of persistent symptoms commonly known as long Covid, the team at the University of Hong Kong reported.

The bacteria and other organisms living in the digestive system, called the gut microbiome, are known to affect health in a variety of ways.

The Hong Kong team checked samples from 100 patients treated in two hospitals to see how the microbiome might affect recovery from Covid-19.

Certain species of bacteria have been shown to alter immune system function, and the researchers suggest that some patients have a balance that’s better suited to controlling the out-of-control inflammation that is seen in some of the sickest patients.

Stool tests might help tell doctors which patients are likely to get severely ill, but more studies will be needed to say for sure.

It’s also not clear what, if anything, people or their doctors could do about their gut microbiomes to affect their risk of severe disease.